Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002493.1 Corchorus olitorius cultivar O-4 contig02493, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4129
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.28


Found at i:2620 original size:18 final size:18

Alignment explanation


    Indices: 2599--2640  Score: 50
    Period size: 17  Copynumber: 2.3  Consensus size: 18

       2589 ATTCACAATT

                              
       2599 AAAAAATTAACAAG-ATG
          1 AAAAAATTAACAAGAATG

                 *      *     
       2616 AAAAAGTTAACAGGAATG
          1 AAAAAATTAACAAGAATG

                   
       2634 AAGAAAA
          1 AA-AAAA

       2641 ATTTTTCTTC


Statistics
Matches: 20,  Mismatches: 3, Indels: 2
        0.80            0.12        0.08

Matches are distributed among these distances:
  17   12  0.60
  18    5  0.25
  19    3  0.15

ACGTcount: A:0.64, C:0.05, G:0.17, T:0.14


Consensus pattern (18 bp):   
AAAAAATTAACAAGAATG
Done.