Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002498.1 Corchorus olitorius cultivar O-4 contig02498, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 619

Length: 1032
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31


Found at i:408 original size:21 final size:21

Alignment explanation


    Indices: 382--423  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        372 ACCTATCGAA

                                 
        382 AATTAGAAGGACTCGTTCTCT
          1 AATTAGAAGGACTCGTTCTCT

                                 
        403 AATTAGAAGGACTCGTTCTCT
          1 AATTAGAAGGACTCGTTCTCT

        424 GTAGGTCGAT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33


Consensus pattern (21 bp):   
AATTAGAAGGACTCGTTCTCT
Done.