Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002513.1 Corchorus olitorius cultivar O-4 contig02513, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 924

Length: 1541
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29


Found at i:88 original size:15 final size:15

Alignment explanation


    Indices: 68--97  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

         58 TTAGGATCTT

                           
         68 CCAGAGCTGACTTAA
          1 CCAGAGCTGACTTAA

                           
         83 CCAGAGCTGACTTAA
          1 CCAGAGCTGACTTAA

         98 TAAGTAAGGC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20


Consensus pattern (15 bp):   
CCAGAGCTGACTTAA
Done.