Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002515.1 Corchorus olitorius cultivar O-4 contig02515, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 606

Length: 1011
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36


Found at i:441 original size:25 final size:25

Alignment explanation


    Indices: 407--457  Score: 102
    Period size: 25  Copynumber: 2.0  Consensus size: 25

        397 GGTTGTGCAG

                                     
        407 CATCGGGATGTGCAGTTTATTCATA
          1 CATCGGGATGTGCAGTTTATTCATA

                                     
        432 CATCGGGATGTGCAGTTTATTCATA
          1 CATCGGGATGTGCAGTTTATTCATA

             
        457 C
          1 C

        458 GGAGATTGTT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   26  1.00

ACGTcount: A:0.24, C:0.18, G:0.24, T:0.35


Consensus pattern (25 bp):   
CATCGGGATGTGCAGTTTATTCATA
Done.