Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002516.1 Corchorus olitorius cultivar O-4 contig02516, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 666

Length: 1110
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37


Found at i:518 original size:10 final size:9

Alignment explanation


    Indices: 470--526  Score: 57
    Period size: 9  Copynumber: 6.4  Consensus size: 9

        460 ATTTCTTACC

                 *   
        470 CTTATCTTT
          1 CTTATTTTT

                     
        479 -TTATTTTT
          1 CTTATTTTT

             *       
        487 CGTATTTTT
          1 CTTATTTTT

                      
        496 CTT-TTTCTT
          1 CTTATTT-TT

                     
        505 -TTATTTTT
          1 CTTATTTTT

                      
        513 CGTTATTTTT
          1 C-TTATTTTT

                
        523 CTTA
          1 CTTA

        527 GTTACTTTTA


Statistics
Matches: 40,  Mismatches: 3, Indels: 10
        0.75            0.06        0.19

Matches are distributed among these distances:
   8   14  0.35
   9   17  0.43
  10    9  0.22

ACGTcount: A:0.11, C:0.12, G:0.04, T:0.74


Consensus pattern (9 bp):   
CTTATTTTT
Done.