Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000252.1 Corchorus olitorius cultivar O-4 contig00252, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 656

Length: 1094
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.35


Found at i:46 original size:5 final size:5

Alignment explanation


    Indices: 26--58  Score: 50
    Period size: 5  Copynumber: 6.6  Consensus size: 5

         16 GAATATATAA

                                                    
         26 TTTCT TCTTC- TTTCT TTTCT TTTCT TTTCT TTT
          1 TTTCT T-TTCT TTTCT TTTCT TTTCT TTTCT TTT

         59 TTAAATGTTT


Statistics
Matches: 26,  Mismatches: 0, Indels: 4
        0.87            0.00        0.13

Matches are distributed among these distances:
   4    3  0.12
   5   20  0.77
   6    3  0.12

ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79


Consensus pattern (5 bp):   
TTTCT

Done.