Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002532.1 Corchorus olitorius cultivar O-4 contig02532, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2474
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32


Found at i:1520 original size:26 final size:26

Alignment explanation


    Indices: 1484--1537  Score: 108
    Period size: 26  Copynumber: 2.1  Consensus size: 26

       1474 TAAATTCTTG

                                      
       1484 CCTTAATTATTAGGTGGGATAATATA
          1 CCTTAATTATTAGGTGGGATAATATA

                                      
       1510 CCTTAATTATTAGGTGGGATAATATA
          1 CCTTAATTATTAGGTGGGATAATATA

              
       1536 CC
          1 CC

       1538 GTCTAATCAA


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   28  1.00

ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37


Consensus pattern (26 bp):   
CCTTAATTATTAGGTGGGATAATATA
Done.