Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002533.1 Corchorus olitorius cultivar O-4 contig02533, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2290
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.35


Found at i:1823 original size:2 final size:2

Alignment explanation


    Indices: 1818--1871  Score: 71
    Period size: 2  Copynumber: 29.0  Consensus size: 2

       1808 TTAGTGATTT

                                                                  *       
       1818 TA TA TA TA -A TA TA TA -A TA TA TA -A TA TA -A TA TA AA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

                                   
       1856 TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA

       1872 GTAAGATTAT


Statistics
Matches: 46,  Mismatches: 2, Indels: 8
        0.82            0.04        0.14

Matches are distributed among these distances:
   1    4  0.09
   2   42  0.91

ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44


Consensus pattern (2 bp):   
TA

Done.