Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002537.1 Corchorus olitorius cultivar O-4 contig02538, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 651

Length: 1085
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28


Found at i:341 original size:11 final size:11

Alignment explanation


    Indices: 327--360  Score: 68
    Period size: 11  Copynumber: 3.1  Consensus size: 11

        317 TAAAGGAAAA

                       
        327 AGCTAGGAAGG
          1 AGCTAGGAAGG

                       
        338 AGCTAGGAAGG
          1 AGCTAGGAAGG

                       
        349 AGCTAGGAAGG
          1 AGCTAGGAAGG

             
        360 A
          1 A

        361 CCCTACTCCT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   23  1.00

ACGTcount: A:0.38, C:0.09, G:0.44, T:0.09


Consensus pattern (11 bp):   
AGCTAGGAAGG
Done.