Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002547.1 Corchorus olitorius cultivar O-4 contig02548, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 606

Length: 1011
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.30


Found at i:722 original size:16 final size:16

Alignment explanation


    Indices: 701--733  Score: 66
    Period size: 16  Copynumber: 2.1  Consensus size: 16

        691 TAGCTGCAGA

                            
        701 ACTCTAGCTTCACTTC
          1 ACTCTAGCTTCACTTC

                            
        717 ACTCTAGCTTCACTTC
          1 ACTCTAGCTTCACTTC

             
        733 A
          1 A

        734 AAGGCTCGAC


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   17  1.00

ACGTcount: A:0.21, C:0.36, G:0.06, T:0.36


Consensus pattern (16 bp):   
ACTCTAGCTTCACTTC

Found at i:809 original size:21 final size:21

Alignment explanation


    Indices: 783--825  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        773 TTGATGAGAC

                                 
        783 CTTTAGATAGATTGTCGCTTT
          1 CTTTAGATAGATTGTCGCTTT

                                 
        804 CTTTAGATAGATTGTCGCTTT
          1 CTTTAGATAGATTGTCGCTTT

             
        825 C
          1 C

        826 GAGACTTACT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.19, C:0.16, G:0.19, T:0.47


Consensus pattern (21 bp):   
CTTTAGATAGATTGTCGCTTT

Done.