Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000256.1 Corchorus olitorius cultivar O-4 contig00256, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 627

Length: 1046
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.28

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:806 original size:18 final size:18

Alignment explanation


    Indices: 745--813  Score: 66
    Period size: 18  Copynumber: 3.8  Consensus size: 18

        735 CAAAGGTTCT

                              
        745 TGCGGTAGTGGAACATCC
          1 TGCGGTAGTGGAACATCC

                ** *  *     * 
        763 TGCGACAATGCAACATTC
          1 TGCGGTAGTGGAACATCC

              **              
        781 TGTAGTAGTGGAACATCC
          1 TGCGGTAGTGGAACATCC

                      *    
        799 TGCGGTAGTGTAACA
          1 TGCGGTAGTGGAACA

        814 ATATTTTGTA


Statistics
Matches: 36,  Mismatches: 15, Indels: 0
        0.71            0.29        0.00

Matches are distributed among these distances:
  18   36  1.00

ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25


Consensus pattern (18 bp):   
TGCGGTAGTGGAACATCC
Done.