Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002560.1 Corchorus olitorius cultivar O-4 contig02561, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1727
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39


Found at i:1214 original size:58 final size:58

Alignment explanation


    Indices: 1118--1227  Score: 168
    Period size: 58  Copynumber: 1.9  Consensus size: 58

       1108 ATAATCAAAA

                                                          *           
       1118 TATCAAGTGACATGTTCTTTATTAGATGCATAAAAAAAGACGTTTTCGGACCAAGACT
          1 TATCAAGTGACATGTTCTTTATTAGATGCATAAAAAAAGACGTTTTAGGACCAAGACT

                *            *            *                      
       1176 TATCGAGTGACATGTTTTTTTATTAGATGCCT-AAAAAAGACGTTTTAGGACC
          1 TATCAAGTGACATG-TTCTTTATTAGATGCATAAAAAAAGACGTTTTAGGACC

       1228 GAGGCATGAT


Statistics
Matches: 47,  Mismatches: 4, Indels: 2
        0.89            0.08        0.04

Matches are distributed among these distances:
  58   32  0.68
  59   15  0.32

ACGTcount: A:0.34, C:0.15, G:0.18, T:0.34


Consensus pattern (58 bp):   
TATCAAGTGACATGTTCTTTATTAGATGCATAAAAAAAGACGTTTTAGGACCAAGACT
Done.