Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002563.1 Corchorus olitorius cultivar O-4 contig02564, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 706

Length: 1178
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33


Found at i:404 original size:70 final size:70

Alignment explanation


    Indices: 291--435  Score: 281
    Period size: 70  Copynumber: 2.1  Consensus size: 70

        281 TAACTTCAAA

                                                                             
        291 ACACAACATATGAGCATTAATTACACAAATAACACATTCGAAATAAACATTTTCTCCAAAACAAC
          1 ACACAACATATGAGCATTAATTACACAAATAACACATTCGAAATAAACATTTTCTCCAAAACAAC

                 
        356 GTTCT
         66 GTTCT

                              *                                              
        361 ACACAACATATGAGCATTGATTACACAAATAACACATTCGAAATAAACATTTTCTCCAAAACAAC
          1 ACACAACATATGAGCATTAATTACACAAATAACACATTCGAAATAAACATTTTCTCCAAAACAAC

                 
        426 GTTCT
         66 GTTCT

                 
        431 ACACA
          1 ACACA

        436 CAAACATGAA


Statistics
Matches: 74,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  70   74  1.00

ACGTcount: A:0.46, C:0.23, G:0.06, T:0.25


Consensus pattern (70 bp):   
ACACAACATATGAGCATTAATTACACAAATAACACATTCGAAATAAACATTTTCTCCAAAACAAC
GTTCT
Done.