Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002565.1 Corchorus olitorius cultivar O-4 contig02566, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3275
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40


Found at i:1159 original size:40 final size:40

Alignment explanation


    Indices: 1104--1183  Score: 133
    Period size: 40  Copynumber: 2.0  Consensus size: 40

       1094 CGGGAAAAAG

                              *    *                
       1104 AAGATTTCGATAAGGAGAGAGTTTAATGAACTTTGGAAGC
          1 AAGATTTCGATAAGGAGAAAGTTGAATGAACTTTGGAAGC

                   *                                
       1144 AAGATTTGGATAAGGAGAAAGTTGAATGAACTTTGGAAGC
          1 AAGATTTCGATAAGGAGAAAGTTGAATGAACTTTGGAAGC

       1184 TAGAATTCTG


Statistics
Matches: 37,  Mismatches: 3, Indels: 0
        0.93            0.08        0.00

Matches are distributed among these distances:
  40   37  1.00

ACGTcount: A:0.39, C:0.06, G:0.29, T:0.26


Consensus pattern (40 bp):   
AAGATTTCGATAAGGAGAAAGTTGAATGAACTTTGGAAGC
Done.