Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002574.1 Corchorus olitorius cultivar O-4 contig02575, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 620

Length: 1034
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28


Found at i:494 original size:23 final size:23

Alignment explanation


    Indices: 468--513  Score: 92
    Period size: 23  Copynumber: 2.0  Consensus size: 23

        458 ACCTATCCAA

                                   
        468 AACGAAACCTTAGCTAAAAGAAT
          1 AACGAAACCTTAGCTAAAAGAAT

                                   
        491 AACGAAACCTTAGCTAAAAGAAT
          1 AACGAAACCTTAGCTAAAAGAAT

        514 CTCACGAAAA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.52, C:0.17, G:0.13, T:0.17


Consensus pattern (23 bp):   
AACGAAACCTTAGCTAAAAGAAT
Done.