Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002577.1 Corchorus olitorius cultivar O-4 contig02578, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2457
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.34


Found at i:774 original size:2 final size:2

Alignment explanation


    Indices: 769--797  Score: 58
    Period size: 2  Copynumber: 14.5  Consensus size: 2

        759 GTGTGTGTGT

                                                       
        769 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

        798 CAAGTAGAGT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Found at i:2022 original size:10 final size:11

Alignment explanation


    Indices: 1983--2023  Score: 55
    Period size: 11  Copynumber: 3.7  Consensus size: 11

       1973 TTGATAGCGT

                     * 
       1983 AACAAAAATAA
          1 AACAAAAATGA

               *       
       1994 AACGAAAATGA
          1 AACAAAAATGA

                       
       2005 AACAAAAATGA
          1 AACAAAAATGA

              *     
       2016 AATAAAAA
          1 AACAAAAA

       2024 CAAAAAACAG


Statistics
Matches: 26,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  11   26  1.00

ACGTcount: A:0.76, C:0.07, G:0.07, T:0.10


Consensus pattern (11 bp):   
AACAAAAATGA
Done.