Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000258.1 Corchorus olitorius cultivar O-4 contig00258, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 644

Length: 1074
ACGTcount: A:0.22, C:0.19, G:0.21, T:0.37


Found at i:284 original size:15 final size:15

Alignment explanation


    Indices: 258--295  Score: 67
    Period size: 15  Copynumber: 2.5  Consensus size: 15

        248 TTTGCTTTGT

                            
        258 TTTCTAGTTTAATTGC
          1 TTTCT-GTTTAATTGC

                           
        274 TTTCTGTTTAATTGC
          1 TTTCTGTTTAATTGC

                   
        289 TTTCTGT
          1 TTTCTGT

        296 CAACCTCTGT


Statistics
Matches: 22,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  15   17  0.77
  16    5  0.23

ACGTcount: A:0.13, C:0.13, G:0.13, T:0.61


Consensus pattern (15 bp):   
TTTCTGTTTAATTGC
Done.