Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002592.1 Corchorus olitorius cultivar O-4 contig02593, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2338
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34


Found at i:773 original size:53 final size:53

Alignment explanation


    Indices: 715--824  Score: 211
    Period size: 53  Copynumber: 2.1  Consensus size: 53

        705 TCTTTAAATC

                                                                 
        715 CAATAGTTCATTGCATTTTGTATTATTTGGTATGTGTGCTTATTTAATAGATT
          1 CAATAGTTCATTGCATTTTGTATTATTTGGTATGTGTGCTTATTTAATAGATT

                                                              *  
        768 CAATAGTTCATTGCATTTTGTATTATTTGGTATGTGTGCTTATTTAATAGGTT
          1 CAATAGTTCATTGCATTTTGTATTATTTGGTATGTGTGCTTATTTAATAGATT

                
        821 CAAT
          1 CAAT

        825 TGAATAAATA


Statistics
Matches: 56,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  53   56  1.00

ACGTcount: A:0.25, C:0.08, G:0.17, T:0.50


Consensus pattern (53 bp):   
CAATAGTTCATTGCATTTTGTATTATTTGGTATGTGTGCTTATTTAATAGATT

Found at i:878 original size:103 final size:101

Alignment explanation


    Indices: 765--970  Score: 376
    Period size: 103  Copynumber: 2.0  Consensus size: 101

        755 TATTTAATAG

                                                                             
        765 ATTCAATAGTTCATTGCATTTTGTATTATTTGGTATGTGTGCTTATTTAATAGGTTCAATTGAAT
          1 ATTCAATAGTTCATTGCATTTTGTATTATTTGGTATGTGTGCTTATTTAATAGGTTCAATTGAAT

               *                 *                
        830 AAATAACACAATTAATAATAGTTATATATAATAGAATT
         66 AAACAACACAATTAATAATA-ATA-ATATAATAGAATT

                                                                             
        868 ATTCAATAGTTCATTGCATTTTGTATTATTTGGTATGTGTGCTTATTTAATAGGTTCAATTGAAT
          1 ATTCAATAGTTCATTGCATTTTGTATTATTTGGTATGTGTGCTTATTTAATAGGTTCAATTGAAT

                                                
        933 AAACAACACAATTAATAATAATAATATAATAGAATT
         66 AAACAACACAATTAATAATAATAATATAATAGAATT

              
        969 AT
          1 AT

        971 ATTATTTTAA


Statistics
Matches: 101,  Mismatches: 2, Indels: 2
        0.96            0.02        0.02

Matches are distributed among these distances:
 101   15  0.15
 102    2  0.02
 103   84  0.83

ACGTcount: A:0.38, C:0.07, G:0.12, T:0.43


Consensus pattern (101 bp):   
ATTCAATAGTTCATTGCATTTTGTATTATTTGGTATGTGTGCTTATTTAATAGGTTCAATTGAAT
AAACAACACAATTAATAATAATAATATAATAGAATT
Done.