Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002597.1 Corchorus olitorius cultivar O-4 contig02598, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2835
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.34


Found at i:801 original size:14 final size:14

Alignment explanation


    Indices: 784--810  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

        774 TGTATACTAA

                          
        784 TATATGATAATTAT
          1 TATATGATAATTAT

                         
        798 TATATGATAATTA
          1 TATATGATAATTA

        811 AGCTATATAT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.44, C:0.00, G:0.07, T:0.48


Consensus pattern (14 bp):   
TATATGATAATTAT

Found at i:2816 original size:2 final size:2

Alignment explanation


    Indices: 2803--2835  Score: 57
    Period size: 2  Copynumber: 16.5  Consensus size: 2

       2793 TAACTATGTC

                      *                                      
       2803 TA TA TA TC TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T


Statistics
Matches: 29,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   29  1.00

ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Done.