Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002604.1 Corchorus olitorius cultivar O-4 contig02605, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 824

Length: 1374
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39


Found at i:1071 original size:13 final size:13

Alignment explanation


    Indices: 1053--1083  Score: 62
    Period size: 13  Copynumber: 2.4  Consensus size: 13

       1043 ACTATAAAAG

                         
       1053 TGGATATACAAAT
          1 TGGATATACAAAT

                         
       1066 TGGATATACAAAT
          1 TGGATATACAAAT

                 
       1079 TGGAT
          1 TGGAT

       1084 TGATAAAAAA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   18  1.00

ACGTcount: A:0.42, C:0.06, G:0.19, T:0.32


Consensus pattern (13 bp):   
TGGATATACAAAT
Done.