Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002608.1 Corchorus olitorius cultivar O-4 contig02610, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3024
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.35


Found at i:942 original size:16 final size:17

Alignment explanation


    Indices: 910--942  Score: 50
    Period size: 16  Copynumber: 2.0  Consensus size: 17

        900 TAAAAAAATT

                        *    
        910 ATTATTCTTAAATATAA
          1 ATTATTCTTAAAAATAA

                             
        927 ATTATT-TTAAAAATAA
          1 ATTATTCTTAAAAATAA

        943 TTTTTATATT


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  16    9  0.60
  17    6  0.40

ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45


Consensus pattern (17 bp):   
ATTATTCTTAAAAATAA
Done.