Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002609.1 Corchorus olitorius cultivar O-4 contig02611, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 600

Length: 1001
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.35


Found at i:489 original size:2 final size:2

Alignment explanation


    Indices: 482--518  Score: 67
    Period size: 2  Copynumber: 19.0  Consensus size: 2

        472 CATTAGCTAG

                                                                    
        482 TA TA TA TA TA TA TA TA T- TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

        519 AAAATACGAA


Statistics
Matches: 34,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   1    1  0.03
   2   33  0.97

ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51


Consensus pattern (2 bp):   
TA

Found at i:504 original size:17 final size:17

Alignment explanation


    Indices: 482--515  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        472 CATTAGCTAG

                             
        482 TATATATATATATATAT
          1 TATATATATATATATAT

                             
        499 TATATATATATATATAT
          1 TATATATATATATATAT

        516 ATAAAAATAC


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53


Consensus pattern (17 bp):   
TATATATATATATATAT
Done.