Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002622.1 Corchorus olitorius cultivar O-4 contig02624, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 875

Length: 1459
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35


Found at i:754 original size:49 final size:49

Alignment explanation


    Indices: 701--798  Score: 196
    Period size: 49  Copynumber: 2.0  Consensus size: 49

        691 GGAATAGGTT

                                                             
        701 TACATAGTTATGGTTCATTTACATTAACATCTAATTGAATTGAATAAAA
          1 TACATAGTTATGGTTCATTTACATTAACATCTAATTGAATTGAATAAAA

                                                             
        750 TACATAGTTATGGTTCATTTACATTAACATCTAATTGAATTGAATAAAA
          1 TACATAGTTATGGTTCATTTACATTAACATCTAATTGAATTGAATAAAA

        799 AAAGGCTAAG


Statistics
Matches: 49,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  49   49  1.00

ACGTcount: A:0.41, C:0.10, G:0.10, T:0.39


Consensus pattern (49 bp):   
TACATAGTTATGGTTCATTTACATTAACATCTAATTGAATTGAATAAAA

Found at i:867 original size:22 final size:22

Alignment explanation


    Indices: 839--882  Score: 88
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        829 GACAGCATAT

                                  
        839 ATATAAGAAAACTTATTGTAAG
          1 ATATAAGAAAACTTATTGTAAG

                                  
        861 ATATAAGAAAACTTATTGTAAG
          1 ATATAAGAAAACTTATTGTAAG

        883 CTGTCAAGAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.50, C:0.05, G:0.14, T:0.32


Consensus pattern (22 bp):   
ATATAAGAAAACTTATTGTAAG
Done.