Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002632.1 Corchorus olitorius cultivar O-4 contig02634, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3331
ACGTcount: A:0.19, C:0.33, G:0.29, T:0.19


Found at i:124 original size:15 final size:16

Alignment explanation


    Indices: 95--127  Score: 50
    Period size: 15  Copynumber: 2.1  Consensus size: 16

         85 CAGTTCACGC

                      *     
         95 GCGGCACTGCGCTGCA
          1 GCGGCACTGCCCTGCA

                            
        111 GCGG-ACTGCCCTGCA
          1 GCGGCACTGCCCTGCA

              
        126 GC
          1 GC

        128 CGATAGCCCA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  15   12  0.75
  16    4  0.25

ACGTcount: A:0.12, C:0.39, G:0.36, T:0.12


Consensus pattern (16 bp):   
GCGGCACTGCCCTGCA
Done.