Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002655.1 Corchorus olitorius cultivar O-4 contig02657, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 739

Length: 1232
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32


Found at i:806 original size:24 final size:23

Alignment explanation


    Indices: 774--840  Score: 71
    Period size: 24  Copynumber: 2.8  Consensus size: 23

        764 GGTTCTGCAC

                                   *
        774 CCCGTTTTTGGGATCATTCAACAT
          1 CCCGTTTTTGGGATCATTCAA-AG

                        * *        
        798 CCCGTTTTTGGGGTTATTCAAAG
          1 CCCGTTTTTGGGATCATTCAAAG

               **               
        821 CACTATTTTTGGGATCATTC
          1 C-CCGTTTTTGGGATCATTC

        841 CCATTTTTGG


Statistics
Matches: 35,  Mismatches: 7, Indels: 2
        0.80            0.16        0.05

Matches are distributed among these distances:
  23    2  0.06
  24   33  0.94

ACGTcount: A:0.19, C:0.21, G:0.19, T:0.40


Consensus pattern (23 bp):   
CCCGTTTTTGGGATCATTCAAAG

Found at i:848 original size:18 final size:17

Alignment explanation


    Indices: 825--870  Score: 65
    Period size: 18  Copynumber: 2.6  Consensus size: 17

        815 TCAAAGCACT

                              
        825 ATTTTTGGGATCATTCCC
          1 ATTTTTGGGATCATT-CC

                    *        
        843 ATTTTTGGAATCATTCC
          1 ATTTTTGGGATCATTCC

            *          
        860 GTTTTTGGGAT
          1 ATTTTTGGGAT

        871 TGTTTAATGT


Statistics
Matches: 25,  Mismatches: 3, Indels: 1
        0.86            0.10        0.03

Matches are distributed among these distances:
  17   11  0.44
  18   14  0.56

ACGTcount: A:0.17, C:0.15, G:0.20, T:0.48


Consensus pattern (17 bp):   
ATTTTTGGGATCATTCC

Done.