Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002665.1 Corchorus olitorius cultivar O-4 contig02667, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3161
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37


Found at i:1260 original size:22 final size:24

Alignment explanation


    Indices: 1232--1282  Score: 79
    Period size: 22  Copynumber: 2.2  Consensus size: 24

       1222 AAAGTATTGA

                                    
       1232 TTTTTTGTGCTTTT-CGA-TGTAT
          1 TTTTTTGTGCTTTTACGAGTGTAT

                           *        
       1254 TTTTTTGTGCTTTTAGGAGTGTAT
          1 TTTTTTGTGCTTTTACGAGTGTAT

                 
       1278 TTTTT
          1 TTTTT

       1283 AGATAATCTT


Statistics
Matches: 26,  Mismatches: 1, Indels: 2
        0.90            0.03        0.07

Matches are distributed among these distances:
  22   14  0.54
  23    2  0.08
  24   10  0.38

ACGTcount: A:0.10, C:0.06, G:0.20, T:0.65


Consensus pattern (24 bp):   
TTTTTTGTGCTTTTACGAGTGTAT
Done.