Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002671.1 Corchorus olitorius cultivar O-4 contig02673, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4393
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26


Found at i:3045 original size:14 final size:14

Alignment explanation


    Indices: 3026--3055  Score: 51
    Period size: 14  Copynumber: 2.1  Consensus size: 14

       3016 GCATTAAACA

                          
       3026 ATTACCCATTACTC
          1 ATTACCCATTACTC

                       *  
       3040 ATTACCCATTATTC
          1 ATTACCCATTACTC

              
       3054 AT
          1 AT

       3056 CATCAATGTC


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.30, C:0.30, G:0.00, T:0.40


Consensus pattern (14 bp):   
ATTACCCATTACTC
Done.