Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002676.1 Corchorus olitorius cultivar O-4 contig02678, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 748

Length: 1247
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29


Found at i:79 original size:25 final size:25

Alignment explanation


    Indices: 47--97  Score: 102
    Period size: 25  Copynumber: 2.0  Consensus size: 25

         37 AAATTACCCA

                                     
         47 GTCGAAACAATAAACAAAAAACCAG
          1 GTCGAAACAATAAACAAAAAACCAG

                                     
         72 GTCGAAACAATAAACAAAAAACCAG
          1 GTCGAAACAATAAACAAAAAACCAG

             
         97 G
          1 G

         98 CTTTAACCAG


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   26  1.00

ACGTcount: A:0.59, C:0.20, G:0.14, T:0.08


Consensus pattern (25 bp):   
GTCGAAACAATAAACAAAAAACCAG
Done.