Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000269.1 Corchorus olitorius cultivar O-4 contig00269, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 703

Length: 1173
ACGTcount: A:0.41, C:0.14, G:0.09, T:0.35


Found at i:412 original size:25 final size:24

Alignment explanation


    Indices: 384--445  Score: 81
    Period size: 25  Copynumber: 2.6  Consensus size: 24

        374 GTGGATTGTA

                        *            
        384 AAATAAATTGAATAATTAAGACATT
          1 AAATAAATTGAAGAATTAA-ACATT

                     *              
        409 AAATAAATTTAAGAATTAAACATT
          1 AAATAAATTGAAGAATTAAACATT

                     *    
        433 AAA-AAATTCAAGA
          1 AAATAAATTGAAGA

        446 CTGACCCAAT


Statistics
Matches: 34,  Mismatches: 3, Indels: 2
        0.87            0.08        0.05

Matches are distributed among these distances:
  23    9  0.26
  24    8  0.24
  25   17  0.50

ACGTcount: A:0.60, C:0.05, G:0.06, T:0.29


Consensus pattern (24 bp):   
AAATAAATTGAAGAATTAAACATT
Done.