Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002702.1 Corchorus olitorius cultivar O-4 contig02704, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 848

Length: 1414
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.26


Found at i:358 original size:32 final size:32

Alignment explanation


    Indices: 322--389  Score: 136
    Period size: 32  Copynumber: 2.1  Consensus size: 32

        312 TTCATTTTCC

                                            
        322 CTTAAAAAAGCTAGTAAGCATCACTTTCAATG
          1 CTTAAAAAAGCTAGTAAGCATCACTTTCAATG

                                            
        354 CTTAAAAAAGCTAGTAAGCATCACTTTCAATG
          1 CTTAAAAAAGCTAGTAAGCATCACTTTCAATG

                
        386 CTTA
          1 CTTA

        390 TTGTTCTAAA


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  32   36  1.00

ACGTcount: A:0.40, C:0.19, G:0.12, T:0.29


Consensus pattern (32 bp):   
CTTAAAAAAGCTAGTAAGCATCACTTTCAATG
Done.