Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002706.1 Corchorus olitorius cultivar O-4 contig02708, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 609

Length: 1016
ACGTcount: A:0.34, C:0.21, G:0.12, T:0.34


Found at i:744 original size:14 final size:14

Alignment explanation


    Indices: 725--755  Score: 53
    Period size: 14  Copynumber: 2.2  Consensus size: 14

        715 AAAATTTTTG

                   *      
        725 TTTCAAATAAAAAT
          1 TTTCAAACAAAAAT

                          
        739 TTTCAAACAAAAAT
          1 TTTCAAACAAAAAT

               
        753 TTT
          1 TTT

        756 ATTCGGAGGG


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.52, C:0.10, G:0.00, T:0.39


Consensus pattern (14 bp):   
TTTCAAACAAAAAT
Done.