Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002707.1 Corchorus olitorius cultivar O-4 contig02709, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 708

Length: 1180
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30


Found at i:384 original size:29 final size:29

Alignment explanation


    Indices: 351--409  Score: 118
    Period size: 29  Copynumber: 2.0  Consensus size: 29

        341 GATTTCGCAA

                                         
        351 TTAAATCATGTATAAGAGATTAGGCTCGT
          1 TTAAATCATGTATAAGAGATTAGGCTCGT

                                         
        380 TTAAATCATGTATAAGAGATTAGGCTCGT
          1 TTAAATCATGTATAAGAGATTAGGCTCGT

             
        409 T
          1 T

        410 GAGACTAAGT


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   30  1.00

ACGTcount: A:0.34, C:0.10, G:0.20, T:0.36


Consensus pattern (29 bp):   
TTAAATCATGTATAAGAGATTAGGCTCGT

Found at i:1023 original size:23 final size:23

Alignment explanation


    Indices: 993--1038  Score: 92
    Period size: 23  Copynumber: 2.0  Consensus size: 23

        983 GGCTCTTAGT

                                   
        993 CCGATATTGAAGGAGTTCAGTTC
          1 CCGATATTGAAGGAGTTCAGTTC

                                   
       1016 CCGATATTGAAGGAGTTCAGTTC
          1 CCGATATTGAAGGAGTTCAGTTC

       1039 ACACTATGAC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30


Consensus pattern (23 bp):   
CCGATATTGAAGGAGTTCAGTTC
Done.