Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002714.1 Corchorus olitorius cultivar O-4 contig02716, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 670

Length: 1118
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.41


Found at i:283 original size:154 final size:154

Alignment explanation


    Indices: 3--1118  Score: 1581
    Period size: 154  Copynumber: 7.2  Consensus size: 154

          1 CA

                         *                  *                            * * 
          3 TTCCATTGTTTATAGCCTAACTATAATCATTTCGGTGAGATTAGTCCACTGTGAAGTTTTTGGTT
          1 TTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCT

                                                                     *      *
         68 CATTTGGAACACTTGTTATTTTGAGCCTATCGGGGCCCATTAGTGACGTTTTGAATCATCTTCGT
         66 CATTTGGAACACTTGTTATTTTGAGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGA

                 *      *           
        133 TTTGGTAACCCTTAATGCCTTTCT
        131 TTTGGCAACCCTCAATGCCTTTCT

                                               *  *                         *
        157 TTCCATTGTTTATGGCCTAACTATAATCATTTTGGGGAAATTAGTCCACTGTGAAGTTTTTAGCA
          1 TTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCT

                *                          *                         *      *
        222 CATTCGGAACACTTGTTATTTTGAGCCTATCAGGGCCCATTAGTGACGTTTTGAATCATCTTCGT
         66 CATTTGGAACACTTGTTATTTTGAGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGA

                 *      *           
        287 TTTGGTAACCCTTAATGCCTTTCT
        131 TTTGGCAACCCTCAATGCCTTTCT

                         *                   *                     *         
        311 TTCCATTGTTTATAGCCTAACTATAATCATTTTTGTGAGATTAGTCCACTGTGAAATTTTTAGCT
          1 TTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCT

                          *                                *                 
        376 CATTTGGAACTACTCGTTATTTTGAGCCTATCGGGGCCCATTAGTGAAGTTTTGAATCGTCTTCG
         66 CATTTGGAAC-ACTTGTTATTTTGAGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCG

                   *                 
        441 ATTT-GCGACCCTCAATGCCTTTCT
        130 ATTTGGCAACCCTCAATGCCTTTCT

                                                                            *
        465 TTCCATTGTTTATGGCCTAACTATAATCAATTTTGGTGAGATTAGTCCACTGTGTAAGTTTTTAA
          1 TTCCATTGTTTATGGCCTAACTATAATC-ATTTTGGTGAGATTAGTCCACTGTG-AAGTTTTTAG

                            *    *   * *                   **                
        530 CTCATTTGGAACACTTTTTATATTGGGTCTATCGTGGGCCCATTAGTTCCGTTTTGAATCGTCTT
         64 CTCATTTGGAACACTTGTTATTTTGAGCCTATCG-GGGCCCATTAGTGACGTTTTGAATCGTCTT

                 *     *                
        595 CGATTAGGCAAACCTCAATG-CTCTTCT
        128 CGATTTGGCAACCCTCAATGCCT-TTCT

                         *                                         *         
        622 TTCCATTGTTTATAGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAATTTTTAGCT
          1 TTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCT

                              *    *        *           **                   
        687 CATTTGGAACACTTGTTAATTTGGGCCTATCGAGGCCCATTAGTTCCGTTTTGAATCGTCTTCGA
         66 CATTTGGAACACTTGTTATTTTGAGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGA

                    *         *     
        752 TTTGGCAAACCTCAATGCTTTTCT
        131 TTTGGCAACCCTCAATGCCTTTCT

               *                                            *               *
        776 TTCAATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCAATGTGAAGTTTTTAGCA
          1 TTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCT

                *                                                    * *    *
        841 CATTCGGAACACTTGTTATTTTGAGCCTATCGGGGCCCATTAGTGACGTTTTGAATCATATTCGC
         66 CATTTGGAACACTTGTTATTTTGAGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGA

                 *      *           
        906 TTTGGTAACCCTTAATGCCTTTCT
        131 TTTGGCAACCCTCAATGCCTTTCT

                                                   *                         
        930 TTCCATTGTTTATGGCCTAACTATAATCATTTTGG-GCAAATTAGTCCACTGTGAAGTTTTTAGC
          1 TTCCATTGTTTATGGCCTAACTATAATCATTTTGGTG-AGATTAGTCCACTGTGAAGTTTTTAGC

                  *  *              *          *   *     **        *   *     
        994 TCATTTTGAGCACTTGTTATTTTGTGCCTATCGGGACCCCTTAGTTCCGTTTTGATTCGCCTTCG
         65 TCATTTGGAACACTTGTTATTTTGAGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCG

                               *    *
       1059 ATTTGGCAACCCTCAATGCTTTTCA
        130 ATTTGGCAACCCTCAATGCCTTTCT

                   *      *                    
       1084 TTCCATTCTTTATGACCTAACTATAATCATTTTGG
          1 TTCCATTGTTTATGGCCTAACTATAATCATTTTGG


Statistics
Matches: 864,  Mismatches: 90, Indels: 16
        0.89            0.09        0.02

Matches are distributed among these distances:
 153    1  0.00
 154  609  0.70
 155  133  0.15
 156   79  0.09
 157   42  0.05

ACGTcount: A:0.22, C:0.20, G:0.18, T:0.41


Consensus pattern (154 bp):   
TTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCT
CATTTGGAACACTTGTTATTTTGAGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGA
TTTGGCAACCCTCAATGCCTTTCT

Done.