Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002728.1 Corchorus olitorius cultivar O-4 contig02730, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 620

Length: 1034
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26


Found at i:67 original size:15 final size:15

Alignment explanation


    Indices: 47--78  Score: 64
    Period size: 15  Copynumber: 2.1  Consensus size: 15

         37 TCTATTATTC

                           
         47 ATTAACTACCTGTAT
          1 ATTAACTACCTGTAT

                           
         62 ATTAACTACCTGTAT
          1 ATTAACTACCTGTAT

              
         77 AT
          1 AT

         79 CTTAAGAATC


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.34, C:0.19, G:0.06, T:0.41


Consensus pattern (15 bp):   
ATTAACTACCTGTAT
Done.