Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002733.1 Corchorus olitorius cultivar O-4 contig02735, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3087
ACGTcount: A:0.18, C:0.34, G:0.34, T:0.15


Found at i:1883 original size:15 final size:15

Alignment explanation


    Indices: 1860--1896  Score: 65
    Period size: 15  Copynumber: 2.5  Consensus size: 15

       1850 TGCTGGTATT

                           
       1860 GCAGCCGCCGCCTCC
          1 GCAGCCGCCGCCTCC

              *            
       1875 GCCGCCGCCGCCTCC
          1 GCAGCCGCCGCCTCC

                   
       1890 GCAGCCG
          1 GCAGCCG

       1897 GAGAAATTGC


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  15   20  1.00

ACGTcount: A:0.05, C:0.59, G:0.30, T:0.05


Consensus pattern (15 bp):   
GCAGCCGCCGCCTCC
Done.