Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002735.1 Corchorus olitorius cultivar O-4 contig02737, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3408
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.19


Found at i:1374 original size:18 final size:18

Alignment explanation


    Indices: 1348--1382  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       1338 ATCTCCCCGC

                              
       1348 CCCACCAAGCCCGCCCAG
          1 CCCACCAAGCCCGCCCAG

                *      *     
       1366 CCCAGCAAGCCTGCCCA
          1 CCCACCAAGCCCGCCCA

       1383 TTTCCGGCGG


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.23, C:0.57, G:0.17, T:0.03


Consensus pattern (18 bp):   
CCCACCAAGCCCGCCCAG
Done.