Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002736.1 Corchorus olitorius cultivar O-4 contig02738, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2132
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35


Found at i:365 original size:8 final size:8

Alignment explanation


    Indices: 352--378  Score: 54
    Period size: 8  Copynumber: 3.4  Consensus size: 8

        342 CTAAGCACCT

                    
        352 GTATTTGG
          1 GTATTTGG

                    
        360 GTATTTGG
          1 GTATTTGG

                    
        368 GTATTTGG
          1 GTATTTGG

               
        376 GTA
          1 GTA

        379 GTGCTCCTGC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   19  1.00

ACGTcount: A:0.15, C:0.00, G:0.37, T:0.48


Consensus pattern (8 bp):   
GTATTTGG
Done.