Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002742.1 Corchorus olitorius cultivar O-4 contig02744, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3471
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.20

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:739 original size:9 final size:9

Alignment explanation


    Indices: 725--764  Score: 55
    Period size: 9  Copynumber: 4.4  Consensus size: 9

        715 GGACGCGAAA

                     
        725 GGCGCTGCT
          1 GGCGCTGCT

                     
        734 GGCGCTGCT
          1 GGCGCTGCT

             *       
        743 GCCGCTGCT
          1 GGCGCTGCT

                      
        752 GGCCGCTGC-
          1 GG-CGCTGCT

                
        761 GGCG
          1 GGCG

        765 TTGTCCGCCT


Statistics
Matches: 28,  Mismatches: 2, Indels: 3
        0.85            0.06        0.09

Matches are distributed among these distances:
   8    2  0.07
   9   20  0.71
  10    6  0.21

ACGTcount: A:0.00, C:0.38, G:0.45, T:0.17


Consensus pattern (9 bp):   
GGCGCTGCT
Done.