Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002750.1 Corchorus olitorius cultivar O-4 contig02752, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2300
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37


Found at i:1296 original size:101 final size:101

Alignment explanation


    Indices: 1116--1325  Score: 368
    Period size: 101  Copynumber: 2.1  Consensus size: 101

       1106 AAAGACGGGG

                                                                             
       1116 TCATC-GCCGAACACGCGAAAATGGTAAAACAGTCTAAGGAGTACTGAAAGTCGTAAACCAAATA
          1 TCATCTGCCGAACACGCGAAAATGGTAAAACAGTCTAAGGAGTACTGAAAGTCGTAAACCAAATA

                                                
       1180 CGTGATCGACTATTAATCAACTAATTGGATCTCATA
         66 CGTGATCGACTATTAATCAACTAATTGGATCTCATA

                            * *                            *    *            
       1216 TCATCTGCCGAACACGTGGAAATGGTAAAACAGTCTAAGGAGTACTGGAAGTTGTAAACCAAATA
          1 TCATCTGCCGAACACGCGAAAATGGTAAAACAGTCTAAGGAGTACTGAAAGTCGTAAACCAAATA

            *                                   
       1281 TGTGATCGACTATTAATCAACTAATTGGATCTCATA
         66 CGTGATCGACTATTAATCAACTAATTGGATCTCATA

                     
       1317 TCATCTGCC
          1 TCATCTGCC

       1326 TCTTTCAAGA


Statistics
Matches: 104,  Mismatches: 5, Indels: 1
        0.95            0.05        0.01

Matches are distributed among these distances:
 100    5  0.05
 101   99  0.95

ACGTcount: A:0.37, C:0.20, G:0.19, T:0.25


Consensus pattern (101 bp):   
TCATCTGCCGAACACGCGAAAATGGTAAAACAGTCTAAGGAGTACTGAAAGTCGTAAACCAAATA
CGTGATCGACTATTAATCAACTAATTGGATCTCATA
Done.