Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002751.1 Corchorus olitorius cultivar O-4 contig02753, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3010
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21


Found at i:354 original size:17 final size:17

Alignment explanation


    Indices: 334--366  Score: 50
    Period size: 17  Copynumber: 1.9  Consensus size: 17

        324 CTGCGATACC

                              
        334 GCCG-CCAGCAGCGCCAG
          1 GCCGTCCAGC-GCGCCAG

                            
        351 GCCGTCCAGCGCGCCA
          1 GCCGTCCAGCGCGCCA

        367 AGCGGATGGT


Statistics
Matches: 15,  Mismatches: 0, Indels: 2
        0.88            0.00        0.12

Matches are distributed among these distances:
  17   10  0.67
  18    5  0.33

ACGTcount: A:0.15, C:0.48, G:0.33, T:0.03


Consensus pattern (17 bp):   
GCCGTCCAGCGCGCCAG
Done.