Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002756.1 Corchorus olitorius cultivar O-4 contig02758, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1761
ACGTcount: A:0.40, C:0.12, G:0.11, T:0.37


Found at i:78 original size:2 final size:2

Alignment explanation


    Indices: 71--104  Score: 59
    Period size: 2  Copynumber: 16.5  Consensus size: 2

         61 AATTACATGG

                                                              
         71 TA TA TA TA TA TA TA TA TA TA TA TA TA TA GTA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA T

        105 TAAGAATTTC


Statistics
Matches: 31,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   2   29  0.94
   3    2  0.06

ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50


Consensus pattern (2 bp):   
TA

Done.