Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002760.1 Corchorus olitorius cultivar O-4 contig02762, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 613

Length: 1022
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30


Found at i:473 original size:21 final size:21

Alignment explanation


    Indices: 447--538  Score: 150
    Period size: 21  Copynumber: 4.4  Consensus size: 21

        437 TGCTAGAAGT

                                 
        447 TCATTGGAGCAAGTTCCAAGC
          1 TCATTGGAGCAAGTTCCAAGC

                                 
        468 TCATTGGAGCAAGTTCCAAGC
          1 TCATTGGAGCAAGTTCCAAGC

                       *        *
        489 TCATTGGAGCAGGTTCCAAGT
          1 TCATTGGAGCAAGTTCCAAGC

                                  
        510 TCATTGGAG-AAGGTTCCAAGC
          1 TCATTGGAGCAA-GTTCCAAGC

                    
        531 TCATTGGA
          1 TCATTGGA

        539 AATGCCTAAG


Statistics
Matches: 66,  Mismatches: 4, Indels: 2
        0.92            0.06        0.03

Matches are distributed among these distances:
  20    1  0.02
  21   65  0.98

ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26


Consensus pattern (21 bp):   
TCATTGGAGCAAGTTCCAAGC

Done.