Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000277.1 Corchorus olitorius cultivar O-4 contig00277, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 662

Length: 1104
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29


Found at i:1057 original size:2 final size:2

Alignment explanation


    Indices: 1050--1096  Score: 94
    Period size: 2  Copynumber: 23.5  Consensus size: 2

       1040 AGGAAATTTT

                                                                          
       1050 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
          1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA

                   
       1092 GA GA G
          1 GA GA G

       1097 TAGTAGTA


Statistics
Matches: 45,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   45  1.00

ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00


Consensus pattern (2 bp):   
GA

Done.