Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002774.1 Corchorus olitorius cultivar O-4 contig02776, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 630

Length: 1051
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.39


Found at i:954 original size:21 final size:21

Alignment explanation


    Indices: 928--1012  Score: 170
    Period size: 21  Copynumber: 4.0  Consensus size: 21

        918 AAATTCTGAT

                                 
        928 ACAAGATACTTATTAGATCGA
          1 ACAAGATACTTATTAGATCGA

                                 
        949 ACAAGATACTTATTAGATCGA
          1 ACAAGATACTTATTAGATCGA

                                 
        970 ACAAGATACTTATTAGATCGA
          1 ACAAGATACTTATTAGATCGA

                                 
        991 ACAAGATACTTATTAGATCGA
          1 ACAAGATACTTATTAGATCGA

             
       1012 A
          1 A

       1013 TAAGTATATT


Statistics
Matches: 64,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   64  1.00

ACGTcount: A:0.44, C:0.14, G:0.14, T:0.28


Consensus pattern (21 bp):   
ACAAGATACTTATTAGATCGA

Done.