Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002825.1 Corchorus olitorius cultivar O-4 contig02827, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2283
ACGTcount: A:0.15, C:0.30, G:0.36, T:0.19


Found at i:794 original size:18 final size:18

Alignment explanation


    Indices: 761--800  Score: 53
    Period size: 18  Copynumber: 2.2  Consensus size: 18

        751 TGCCGGGGCT

                      *     * 
        761 GGCGCAGGTGCGGGCGCA
          1 GGCGCAGGTGAGGGCGAA

                       *      
        779 GGCGCAGGTGATGGCGAA
          1 GGCGCAGGTGAGGGCGAA

                
        797 GGCG
          1 GGCG

        801 AAGGCGTTGG


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.15, C:0.23, G:0.55, T:0.07


Consensus pattern (18 bp):   
GGCGCAGGTGAGGGCGAA
Done.