Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002841.1 Corchorus olitorius cultivar O-4 contig02843, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2308
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27


Found at i:98 original size:54 final size:54

Alignment explanation


    Indices: 4--110  Score: 137
    Period size: 54  Copynumber: 2.0  Consensus size: 54

          1 GAA

                                                                   
          4 CTCAAACATAAAGCTAAAGAGGCCAAGCTAGAAGGCGAAAAAGC-GCTAGATGAT
          1 CTCAAACATAAAGCTAAAGAGGCCAAGCTAGAAGGCGAAAAAGCTG-TAGATGAT

                 *         *       *         *  *                 
         58 CTCAAGCATAAAGCTCAAGAGGCTAAGCTCA-ATGGTGAAAAAGCTGTAGATGA
          1 CTCAAACATAAAGCTAAAGAGGCCAAGCT-AGAAGGCGAAAAAGCTGTAGATGA

        111 CTTTAAAAAA


Statistics
Matches: 46,  Mismatches: 5, Indels: 4
        0.84            0.09        0.07

Matches are distributed among these distances:
  54   44  0.96
  55    2  0.04

ACGTcount: A:0.42, C:0.18, G:0.24, T:0.16


Consensus pattern (54 bp):   
CTCAAACATAAAGCTAAAGAGGCCAAGCTAGAAGGCGAAAAAGCTGTAGATGAT
Done.