Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002848.1 Corchorus olitorius cultivar O-4 contig02850, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 628

Length: 1048
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.34


Found at i:885 original size:17 final size:17

Alignment explanation


    Indices: 863--896  Score: 59
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        853 GCGAATCTAT

                  *          
        863 TCTATCGAGTTATTTGA
          1 TCTATCCAGTTATTTGA

                             
        880 TCTATCCAGTTATTTGA
          1 TCTATCCAGTTATTTGA

        897 AGATGCAGGG


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.24, C:0.15, G:0.15, T:0.47


Consensus pattern (17 bp):   
TCTATCCAGTTATTTGA

Found at i:956 original size:12 final size:12

Alignment explanation


    Indices: 939--964  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        929 TTTGTGTTAT

                        
        939 TTATATATAATA
          1 TTATATATAATA

                        
        951 TTATATATAATA
          1 TTATATATAATA

              
        963 TT
          1 TT

        965 CGTGATATTA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54


Consensus pattern (12 bp):   
TTATATATAATA
Done.