Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000287.1 Corchorus olitorius cultivar O-4 contig00287, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 612

Length: 1020
ACGTcount: A:0.37, C:0.24, G:0.16, T:0.23


Found at i:693 original size:20 final size:19

Alignment explanation


    Indices: 649--699  Score: 66
    Period size: 19  Copynumber: 2.6  Consensus size: 19

        639 CTCACACACA

                              *
        649 AAATCACACACAAAAAAAT
          1 AAATCACACACAAAAAAAG

            *         *        
        668 CAATCACACATAAAAAAAG
          1 AAATCACACACAAAAAAAG

                         
        687 AAGATCACACACA
          1 AA-ATCACACACA

        700 GAGAATAGAA


Statistics
Matches: 26,  Mismatches: 5, Indels: 1
        0.81            0.16        0.03

Matches are distributed among these distances:
  19   17  0.65
  20    9  0.35

ACGTcount: A:0.63, C:0.24, G:0.04, T:0.10


Consensus pattern (19 bp):   
AAATCACACACAAAAAAAG
Done.