Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01000291.1 Corchorus olitorius cultivar O-4 contig00291, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 735
Length: 1226
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Found at i:538 original size:128 final size:128
Alignment explanation
Indices: 310--611 Score: 577
Period size: 128 Copynumber: 2.4 Consensus size: 128
300 AGAATAATTA
* *
310 TAATATACAACACAGATTTAAAACAGATTATATATATAGTAGTATATCTTAAACAAAATGTGGTG
1 TAATATACAACACAGATTTAAAGCAGATTATATATATAGTAGTATATCTTAAACAAAATGTAGTG
375 ATCACTTTATAAATAGTATTGCAGAAACTAATATGCCTGTTGCCTGATATGTGAAATTTAAAC
66 ATCACTTTATAAATAGTATTGCAGAAACTAATATGCCTGTTGCCTGATATGTGAAATTTAAAC
*
438 TAATATACAACACAGATTTAAAGCAGATTATATATATAGTAGTATATCTTAAACAGAATGTAGTG
1 TAATATACAACACAGATTTAAAGCAGATTATATATATAGTAGTATATCTTAAACAAAATGTAGTG
503 ATCACTTTATAAATAGTATTGCAGAAACTAATATGCCTGTTGCCTGATATGTGAAATTTAAAC
66 ATCACTTTATAAATAGTATTGCAGAAACTAATATGCCTGTTGCCTGATATGTGAAATTTAAAC
566 TAATATACAACACAGATTTAAAGCAGATTATATATATAGTAGTATA
1 TAATATACAACACAGATTTAAAGCAGATTATATATATAGTAGTATA
612 GCTATGGCAG
Statistics
Matches: 171, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
128 171 1.00
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.33
Consensus pattern (128 bp):
TAATATACAACACAGATTTAAAGCAGATTATATATATAGTAGTATATCTTAAACAAAATGTAGTG
ATCACTTTATAAATAGTATTGCAGAAACTAATATGCCTGTTGCCTGATATGTGAAATTTAAAC
Done.