Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002930.1 Corchorus olitorius cultivar O-4 contig02935, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 782

Length: 1304
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32


Found at i:914 original size:21 final size:21

Alignment explanation


    Indices: 890--939  Score: 73
    Period size: 21  Copynumber: 2.4  Consensus size: 21

        880 TGCTAGAAGT

                                 
        890 TCATTGGAGAAGGTTCCAAAA
          1 TCATTGGAGAAGGTTCCAAAA

                           *   **
        911 TCATTGGAGAAGGTTTCAAGC
          1 TCATTGGAGAAGGTTCCAAAA

                    
        932 TCATTGGA
          1 TCATTGGA

        940 ATTGCCTAAG


Statistics
Matches: 26,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   26  1.00

ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28


Consensus pattern (21 bp):   
TCATTGGAGAAGGTTCCAAAA
Done.